Changes in version 1.2.0 (2025-10-14)                  

  - run_interaction_analysis() now uses seurat_layer argument instead of
    seurat_slot to be consistent with Seurat (>= 5.0.0)
  - Clean internal data dependencies and remove explicit call to
    SingleCellSignalR::LRdb
  - Fix broken links in README
  - Prepare for CRAN submission

                        Changes in version 1.1.0                        

  - Allow to use a custom LRI database

                 Changes in version 1.0.0 (2023-11-03)                  

01-11-2023

  - Prepare for CRAN release
  - Update links to the Nature Aging paper

                        Changes in version 0.2.4                        

11-04-2023

  - Change default red-green colors in plots
  - Improve README and website

                        Changes in version 0.2.3                        

08-05-2022

  - Remove mouse and rat LRIs with "homolog_orthology_confidence" of 0,
    but only if they are not already provided directly by one of the
    "source database"
  - Remove some miss-curated LRIs

                        Changes in version 0.2.2                        

11-04-2022

  - Compute (permutation-based) p-values and logFC for each ligand and
    receptor gene independently

                        Changes in version 0.2.1                        

20-01-2022

  - Fix a bug that appeared when 'seurat_object[[]]' contained a column
    named 'cell_id'

                        Changes in version 0.2.0                        

24-11-2021

  - New function BuildShiny() that creates a shiny app from the results
  - New function ReduceGO() to reduce GO terms by semantic similarity

                     Changes in version 0.1.0.9000                      

09-11-2021

  - A rat LRI database (LRI_rat) has been added (based on orthology
    conversion)
  - run_interaction_analysis() accepts rat as species parameter
  - LRI datasets have a reduced size
  - Dataset gene_ontology_level is now available as data (instead of
    internal data)

                         Changes in version 0.1                         

04-07-2021

  - All steps of run_interaction_analysis have been tested
  - All exported functions have been tested
  - LRI databases have been curated
  - Complete roxygen-based documentation
  - Vignette contains the main functionalities

                     Changes in version 0.0.0.9000                      

  - Added a NEWS.md file to track changes to the package.
  - Added the first proper documentation
  - Added the first version of the vignette